PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G279800.2
Common NameB456_011G279800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 221aa    MW: 25029.8 Da    PI: 7.1462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G279800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.8e-103074446
                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        WT+eE +++ +a + +G +   +W ++a++++ g+t  +++  ++ 
  Gorai.011G279800.2 30 WTKEENKRFEHALAIYGDDvpdRWIKVAEMIP-GKTVLDVIKQYRE 74
                        *****************99*************.*******999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-42374IPR009057Homeodomain-like
PROSITE profilePS5129310.4932580IPR017884SANT domain
SMARTSM007175.2E-82678IPR001005SANT/Myb domain
SuperFamilySSF466895.68E-122882IPR009057Homeodomain-like
PfamPF002491.0E-83074IPR001005SANT/Myb domain
CDDcd001674.82E-93075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNFSSMEALF STSFMSNMDW FHQENQNTYW TKEENKRFEH ALAIYGDDVP DRWIKVAEMI  60
PGKTVLDVIK QYRELEEDVS DIEAGRIPIP GYPTSSFTLE LVDNHDFDGY RKRPNGAKGH  120
DHERKKDKRR PSIHDITVLN LSSTTTFSDH RKAVSINQSN VLTLQHKIAS MSKAVGLNGS  180
VTVFDSGNGN RFTSSQYQAA QNLYGNAYHG AHIKHQSSVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1630951176RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130ERKKDKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454881.11e-116PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-33DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2VSN11e-166A0A0D2VSN1_G
STRINGGLYMA11G34930.52e-53(Glycine max)
STRINGGLYMA14G06750.12e-53(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-42MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]